
SUMMARISING RUN PARAMETERS
==========================
Input filename: SRR3192657_1.fastq.gz
Trimming mode: paired-end
Trim Galore version: 0.4.1
Cutadapt version: 1.9.1
Quality Phred score cutoff: 20
Quality encoding type selected: ASCII+33
Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; auto-detected)
Maximum trimming error rate: 0.1 (default)
Minimum required adapter overlap (stringency): 1 bp
Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
Running FastQC on the data once trimming has completed
Output file will be GZIP compressed


This is cutadapt 1.9.1 with Python 2.7.6
Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC SRR3192657_1.fastq.gz
Trimming 1 adapter with at most 10.0% errors in single-end mode ...
Finished in 2001.07 s (21 us/read; 2.81 M reads/minute).

=== Summary ===

Total reads processed:              93,555,584
Reads with adapters:                28,666,140 (30.6%)
Reads written (passing filters):    93,555,584 (100.0%)

Total basepairs processed: 9,449,113,984 bp
Quality-trimmed:             146,347,194 bp (1.5%)
Total written (filtered):  9,262,914,510 bp (98.0%)

=== Adapter 1 ===

Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 28666140 times.

No. of allowed errors:
0-9 bp: 0; 10-13 bp: 1

Bases preceding removed adapters:
  A: 28.6%
  C: 35.1%
  G: 19.4%
  T: 16.8%
  none/other: 0.0%

Overview of removed sequences
length	count	expect	max.err	error counts
1	20311079	23388896.0	0	20311079
2	6515303	5847224.0	0	6515303
3	1395339	1461806.0	0	1395339
4	324932	365451.5	0	324932
5	78104	91362.9	0	78104
6	15473	22840.7	0	15473
7	2580	5710.2	0	2580
8	1644	1427.5	0	1644
9	2470	356.9	0	1518 952
10	3304	89.2	1	1237 2067
11	2370	22.3	1	1116 1254
12	1457	5.6	1	1291 166
13	968	1.4	1	915 53
14	1046	1.4	1	1026 20
15	757	1.4	1	739 18
16	759	1.4	1	729 30
17	688	1.4	1	635 53
18	545	1.4	1	465 80
19	277	1.4	1	219 58
20	241	1.4	1	191 50
21	198	1.4	1	182 16
22	176	1.4	1	135 41
23	207	1.4	1	163 44
24	202	1.4	1	134 68
25	159	1.4	1	130 29
26	130	1.4	1	95 35
27	144	1.4	1	113 31
28	173	1.4	1	126 47
29	197	1.4	1	150 47
30	151	1.4	1	110 41
31	104	1.4	1	80 24
32	117	1.4	1	85 32
33	212	1.4	1	191 21
34	224	1.4	1	184 40
35	403	1.4	1	300 103
36	173	1.4	1	124 49
37	264	1.4	1	217 47
38	134	1.4	1	102 32
39	103	1.4	1	77 26
40	92	1.4	1	67 25
41	89	1.4	1	66 23
42	67	1.4	1	49 18
43	80	1.4	1	35 45
44	70	1.4	1	32 38
45	62	1.4	1	41 21
46	81	1.4	1	32 49
47	88	1.4	1	21 67
48	116	1.4	1	27 89
49	53	1.4	1	15 38
50	38	1.4	1	12 26
51	56	1.4	1	19 37
52	43	1.4	1	13 30
53	58	1.4	1	9 49
54	57	1.4	1	7 50
55	70	1.4	1	5 65
56	63	1.4	1	6 57
57	36	1.4	1	9 27
58	53	1.4	1	7 46
59	42	1.4	1	18 24
60	58	1.4	1	13 45
61	51	1.4	1	13 38
62	33	1.4	1	2 31
63	58	1.4	1	8 50
64	34	1.4	1	10 24
65	24	1.4	1	10 14
66	44	1.4	1	15 29
67	40	1.4	1	21 19
68	31	1.4	1	7 24
69	54	1.4	1	9 45
70	107	1.4	1	18 89
71	66	1.4	1	4 62
72	62	1.4	1	1 61
73	38	1.4	1	0 38
74	51	1.4	1	1 50
75	57	1.4	1	1 56
76	48	1.4	1	0 48
77	32	1.4	1	0 32
78	42	1.4	1	0 42
79	57	1.4	1	0 57
80	57	1.4	1	0 57
81	53	1.4	1	0 53
82	58	1.4	1	0 58
83	64	1.4	1	1 63
84	78	1.4	1	0 78
85	47	1.4	1	0 47
86	68	1.4	1	0 68
87	47	1.4	1	0 47
88	54	1.4	1	0 54
89	32	1.4	1	0 32
90	58	1.4	1	0 58
91	37	1.4	1	0 37
92	64	1.4	1	0 64
93	30	1.4	1	0 30
94	34	1.4	1	0 34
95	41	1.4	1	0 41
96	39	1.4	1	0 39
97	34	1.4	1	0 34
98	71	1.4	1	1 70
99	16	1.4	1	0 16
100	19	1.4	1	0 19
101	31	1.4	1	0 31


RUN STATISTICS FOR INPUT FILE: SRR3192657_1.fastq.gz
=============================================
93555584 sequences processed in total

